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civicpy 3.0.0 documentation
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The
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Index
_
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A
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B
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C
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D
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E
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F
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G
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H
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I
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M
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N
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P
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R
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S
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T
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U
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V
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W
_
__init__() (civic.CivicRecord method)
A
acmg_codes (civic.Assertion attribute)
addrecord() (exports.VCFWriter method)
addrecords() (exports.VCFWriter method)
aliases (civic.Gene attribute)
(civic.Variant attribute)
allele_registry_id (civic.Variant attribute)
amp_level (civic.Assertion attribute)
Assertion (class in civic)
assertion_direction (civic.Assertion attribute)
assertion_type (civic.Assertion attribute)
assertions (civic.Evidence attribute)
B
bulk_search_variants_by_coordinates() (in module civic)
C
civic
module
CivicAttribute (class in civic)
CivicRecord (class in civic)
clinvar_entries (civic.Variant attribute)
CoordinateQuery (class in civic)
coordinates (civic.Variant attribute)
D
definition (civic.MolecularProfile attribute)
description (civic.Assertion attribute)
(civic.Evidence attribute)
(civic.Gene attribute)
disease (civic.Assertion attribute)
(civic.Evidence attribute)
E
entrez_id (civic.Gene attribute)
(civic.Variant attribute)
entrez_name (civic.Variant attribute)
Evidence (class in civic)
evidence_direction (civic.Evidence attribute)
evidence_level (civic.Evidence attribute)
evidence_type (civic.Evidence attribute)
exports
module
F
fda_companion_test (civic.Assertion attribute)
fda_regulatory_approval (civic.Assertion attribute)
G
gene (civic.Variant attribute)
Gene (class in civic)
gene_id (civic.Variant attribute)
get_all_assertions() (in module civic)
get_all_evidence() (in module civic)
get_all_genes() (in module civic)
get_all_molecular_profiles() (in module civic)
get_all_variants() (in module civic)
get_assertion_by_id() (in module civic)
get_assertions_by_ids() (in module civic)
get_evidence_by_id() (in module civic)
get_evidence_by_ids() (in module civic)
get_gene_by_id() (in module civic)
get_genes_by_ids() (in module civic)
get_molecular_profile_by_id() (in module civic)
get_molecular_profiles_by_ids() (in module civic)
get_variant_by_id() (in module civic)
get_variants_by_ids() (in module civic)
groups (civic.Variant attribute)
H
hgvs_expressions (civic.Variant attribute)
I
id (civic.CivicRecord attribute)
M
module
civic
exports
molecular_profile (civic.Assertion attribute)
(civic.Evidence attribute)
molecular_profile_id (civic.Assertion attribute)
(civic.Evidence attribute)
molecular_profile_score (civic.MolecularProfile attribute)
MolecularProfile (class in civic)
moleulcar_profiles (civic.Variant attribute)
N
name (civic.Assertion attribute)
(civic.Evidence attribute)
(civic.Gene attribute)
(civic.MolecularProfile attribute)
(civic.Variant attribute)
nccn_guideline (civic.Assertion attribute)
nccn_guideline_version (civic.Assertion attribute)
P
phenotypes (civic.Assertion attribute)
(civic.Evidence attribute)
R
rating (civic.Evidence attribute)
S
search_assertions_by_coordinates() (in module civic)
search_variants_by_allele_registry_id() (in module civic)
search_variants_by_coordinates() (in module civic)
search_variants_by_hgvs() (in module civic)
search_variants_by_name() (in module civic)
significance (civic.Assertion attribute)
(civic.Evidence attribute)
site_link (civic.CivicRecord attribute)
(civic.CivicRecord property)
source (civic.Evidence attribute)
sources (civic.Gene attribute)
statement (civic.Evidence attribute)
status (civic.Assertion attribute)
(civic.Evidence attribute)
summary (civic.Assertion attribute)
T
therapies (civic.Assertion attribute)
(civic.Evidence attribute)
therapy_interaction_type (civic.Assertion attribute)
(civic.Evidence attribute)
type (civic.CivicRecord attribute)
types (civic.Variant attribute)
U
update() (civic.CivicRecord method)
V
Variant (class in civic)
variant_aliases (civic.Variant attribute)
variant_groups (civic.Variant attribute)
variant_origin (civic.Assertion attribute)
variant_types (civic.Variant attribute)
variants (civic.Gene attribute)
VCFWriter (class in exports)
W
writeheader() (exports.VCFWriter method)
writerecords() (exports.VCFWriter method)